PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G095400.1
Common NameB456_003G095400, LOC105788399
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 92aa    MW: 10359.7 Da    PI: 9.2512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G095400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-0820591554
                        HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        +i +  ++L++llP+ + + +s K+s a +L+++++YI+sL
  Gorai.003G095400.1 20 QIYDLVSKLQQLLPEvR-NRHSDKVSAAKVLQETCNYIRSL 59
                        6777889********65.99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.3E-9478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.785559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-91977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-52059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRSRQ SSGSRITDDQ IYDLVSKLQQ LLPEVRNRHS DKVSAAKVLQ ETCNYIRSLH  60
REVDDLSERL SELLATTDSA QAAVIRSLLM Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470738.12e-58PREDICTED: transcription factor ILI6-like
SwissprotF4JCN94e-39PRE4_ARATH; Transcription factor PRE4
TrEMBLA0A0D2QI202e-58A0A0D2QI20_G
STRINGVIT_17s0000g05900.t011e-42(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.13e-37activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]